scgpm-seqresults-dnanexus
latest
accept_pending_transfers.py
add_props_to_fq_files.py
add_props_to_project.py
add_r1-r2_fastq_paths.py
add_standard_props_to_projects.py
batch_download_fastqs.py
download_fastqs.py
download_multiple_projects.py
download_project.py
list_projects.py
scgpm_clean_raw_data.py
scgpm_seqresults_dnanexus
dnanexus_utils
scgpm-seqresults-dnanexus
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A
accept_project_transfers() (in module scgpm_seqresults_dnanexus.dnanexus_utils)
D
debug_logger (in module scgpm_seqresults_dnanexus)
DnanexusBarcodeNotFound
download_barcodes_json() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
download_fastqc_reports() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
download_fastqs() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
download_metadata_tar() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
download_qc_report() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
download_run_details_json() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
download_samplesheet() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
DxMissingAlignmentSummaryMetrics
DxMissingLibraryNameProperty
DxMultipleProjectsWithSameLibraryName
DxProjectMissingQueueProperty
DxSeqResults (class in scgpm_seqresults_dnanexus.dnanexus_utils)
F
FastqNotFound
find_org_projects_by_name_glob() (in module scgpm_seqresults_dnanexus.dnanexus_utils)
FQEXT (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults attribute)
G
get_alignment_summary_metrics() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
get_barcode_stats() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
get_fastq_dxfile_objects() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
get_fastq_files_props() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
get_run_details_json() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
get_sample_stats_json() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
L
LOG_DIR (in module scgpm_seqresults_dnanexus)
R
revcomp() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
revcomp_barcode_in_fastqfile_prop() (scgpm_seqresults_dnanexus.dnanexus_utils.DxSeqResults method)
S
scgpm_seqresults_dnanexus (module)
scgpm_seqresults_dnanexus.dnanexus_utils (module)
select_newest_project() (in module scgpm_seqresults_dnanexus.dnanexus_utils)
share_with_org() (in module scgpm_seqresults_dnanexus.dnanexus_utils)